Transcript: lnc-FAM57A-1:1

Basic information

LNCipedia transcript ID: lnc-FAM57A-1:1 
LNCipedia gene ID: lnc-FAM57A-1
Location (hg19): chr17:623631-624327
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 602 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025799; NONHSAT144743
Alternative gene names: XLOC_012069; linc-FAM57A-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.0415 non-coding 
CPAT coding probability 6.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM57A-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM57A-1:1
3.1 lnc-FAM57A-1:1
4.0 lnc-FAM57A-1:1
4.1 lnc-FAM57A-1:1
5.0 lnc-FAM57A-1:1
5.1 lnc-RPA1-53:1
5.2 lnc-FAM57A-1:1