Transcript: lnc-FAM98A-3:1

Basic information

LNCipedia transcript ID: lnc-FAM98A-3:1 
LNCipedia gene ID: lnc-FAM98A-3
Location (hg19): chr2:35223345-35225227
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 494 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000414796; ENST00000414796.1; AC019064.1-001; OTTHUMT00000325416.1; NONHSAT070063
Alternative gene names: ENSG00000237320; AC019064.1; ENSG00000237320.1; OTTHUMG00000152142.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -449.8669 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM98A-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM98A-2:1
3.1 lnc-FAM98A-3:1
4.0 lnc-FAM98A-3:1
4.1 lnc-FAM98A-3:1
5.0 lnc-FAM98A-3:1
5.1 lnc-MAP4K3-82:1
5.2 lnc-FAM98A-3:1