Transcript: lnc-FANCC-1:12

Basic information

LNCipedia transcript ID: lnc-FANCC-1:12 
LNCipedia gene ID: lnc-FANCC-1
Location (hg19): chr9:98177781-98189078
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 739 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000433644; ENST00000433644.1; RP11-435O5.2-001; OTTHUMT00000053234.1
Alternative gene names: ENSG00000237857; RP11-435O5.2; ENSG00000237857.1; OTTHUMG00000020281.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.8801 non-coding 
CPAT coding probability 67.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FANCC-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTCH1-1:1
3.1 lnc-PTCH1-1:1
4.0 lnc-PTCH1-1:1
4.1 lnc-FANCC-1:12
5.0 lnc-FANCC-1:12
5.1 lnc-FANCC-1:12
5.2 lnc-FANCC-1:12