Transcript: lnc-FANCC-1:13

Basic information

LNCipedia transcript ID: lnc-FANCC-1:13 
LNCipedia gene ID: lnc-FANCC-1
Location (hg19): chr9:98177116-98189078
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1404 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000433644.2
Alternative gene names: ENSG00000237857.2; RP11-435O5.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.307 non-coding 
CPAT coding probability 66.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FANCC-1:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTCH1-1:3
4.0 lnc-PTCH1-1:3
4.1 lnc-FANCC-1:13
5.0 lnc-FANCC-1:13
5.1 lnc-FANCC-1:13
5.2 lnc-FANCC-1:13