Transcript: lnc-FARS2-1:1

Basic information

LNCipedia transcript ID: lnc-FARS2-1:1 
LNCipedia gene ID: lnc-FARS2-1
Location (hg19): chr6:5851739-5870453
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011258; ENST00000454882; ENST00000454882.1; RP3-380B8.4-001; OTTHUMT00000039751.1; NONHSAT107529
Alternative gene names: XLOC_005144; linc-LY86-3; ENSG00000233064; RP3-380B8.4; ENSG00000233064.1; OTTHUMG00000014182.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.2785 non-coding 
CPAT coding probability 5.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FARS2-1:1 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FARS2-1:1
3.1 lnc-FARS2-1:1
4.0 lnc-FARS2-1:1
4.1 lnc-FARS2-1:1
5.0 lnc-FARS2-1:1
5.1 lnc-PRPF4B-69:6
5.2 lnc-FARS2-1:1