Transcript: lnc-FARS2-1:2

Basic information

LNCipedia transcript ID: lnc-FARS2-1:2 
LNCipedia gene ID: lnc-FARS2-1
Ensembl Gene ID: ENSG00000233064
Ensembl Transcript ID: ENST00000454882
Location (hg19): chr6:5851739-5870453
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 411 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT107528; ENST00000454882.2
Alternative gene names: ENSG00000233064.2; RP3-380B8.4; AL136307.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -212.2742 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FARS2-1:2 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FARS2-1:2
4.0 lnc-FARS2-1:2
4.1 lnc-FARS2-1:2
5.0 lnc-FARS2-1:2
5.1 lnc-PRPF4B-69:7
5.2 lnc-FARS2-1:2