Transcript: lnc-FAT3-2:5

Basic information

LNCipedia transcript ID: lnc-FAT3-2:5 
LNCipedia gene ID: lnc-FAT3-2
Location (hg19): chr11:91577564-91589682
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019972; NONHSAT023613
Alternative gene names: XLOC_009249; linc-FAT3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.6094 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAT3-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-201M22.1.1-2:3
3.1 lnc-RP11-201M22.1.1-2:3
4.0 lnc-RP11-201M22.1.1-2:3
4.1 lnc-RP11-201M22.1.1-2:3
5.0 lnc-RP11-201M22.1.1-2:3
5.1 lnc-TRIM49C-10:4
5.2 lnc-FAT3-2:5