Transcript: lnc-FBN1-3:1

Basic information

LNCipedia transcript ID: lnc-FBN1-3:1 
LNCipedia gene ID: lnc-FBN1-3
Ensembl Gene ID: ENSG00000259488
Ensembl Transcript ID: ENST00000560323
Location (hg19): chr15:48604550-48624053
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 752 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560323.1; RP11-154J22.1-002; OTTHUMT00000417233.1
Alternative gene names: ENSG00000259488.1; RP11-154J22.1; OTTHUMG00000172154.2; ENSG00000259488.2; AC023355.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9513 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBN1-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBN1-3:1
4.0 lnc-FBN1-3:1
4.1 lnc-FBN1-3:1
5.0 lnc-FBN1-3:1
5.1 lnc-SERINC4-57:1
5.2 lnc-FBN1-3:1