Transcript: lnc-FBXL7-2:1

Basic information

LNCipedia transcript ID: lnc-FBXL7-2:1 
LNCipedia gene ID: lnc-FBXL7-2
Ensembl Gene ID: ENSG00000250448
Ensembl Transcript ID: ENST00000509037
Location (hg19): chr5:16180347-16185694
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2066 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000509037; ENST00000509037.1; RP11-19O2.2-001; OTTHUMT00000366087.1; NONHSAT100594
Alternative gene names: ENSG00000250448; RP11-19O2.2; ENSG00000250448.1; OTTHUMG00000161785.1; AC092335.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.5801 non-coding 
CPAT coding probability 0.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXL7-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXL7-1:1
3.1 lnc-FBXL7-2:1
4.0 lnc-FBXL7-2:1
4.1 lnc-FBXL7-2:1
5.0 lnc-FBXL7-2:1
5.1 lnc-CARD6-201:3
5.2 lnc-FBXL7-2:1