Transcript: lnc-FBXO5-2:1

Basic information

LNCipedia transcript ID: lnc-FBXO5-2:1 
LNCipedia gene ID: lnc-FBXO5-2
Ensembl Gene ID: ENSG00000224893
Ensembl Transcript ID: ENST00000456715
Location (hg19): chr6:153115631-153153048
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011596; ENST00000456715; ENST00000456715.1; RP1-200K18.1-001; OTTHUMT00000042754.1; NONHSAT115593; ENST00000456715.5
Alternative gene names: XLOC_005881; linc-SYNE1-1; ENSG00000224893; RP1-200K18.1; ENSG00000224893.1; OTTHUMG00000015852.1; ENSG00000224893.5; AL160162.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.2238 non-coding 
CPAT coding probability 0.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO5-2:1
3.1 lnc-FBXO5-2:1
4.0 lnc-FBXO5-2:1
4.1 lnc-FBXO5-2:1
5.0 lnc-FBXO5-2:1
5.1 lnc-SYNE1-3:1
5.2 lnc-FBXO5-2:1