Transcript: lnc-FER-1:1

Basic information

LNCipedia transcript ID: lnc-FER-1:1 
LNCipedia gene ID: lnc-FER-1
Location (hg19): chr5:108061406-108063994
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2444 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: TCONS_00009477; ENST00000500295; NONHSAT103126
Alternative gene names: XLOC_004501; linc-FER-1; ENSG00000245338; AC034207.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.269 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FER-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FER-1:1
3.1 lnc-FER-1:1
4.0 lnc-FER-1:1
4.1 lnc-FER-1:1
5.0 lnc-FER-1:1
5.1 lnc-AP3S1-102:1
5.2 lnc-FER-1:1