Transcript: lnc-FER-2:12

Basic information

LNCipedia transcript ID: lnc-FER-2:12 
LNCipedia gene ID: lnc-FER-2
Location (hg19): chr5:107717883-107724140
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6258 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000076960.1|FTMT22000006434.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.6705 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FER-2:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FER-2:12
5.0 lnc-FER-2:12
5.1 lnc-AP3S1-109:10
5.2 lnc-FER-2:12

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