Transcript: lnc-FER-2:4

Basic information

LNCipedia transcript ID: lnc-FER-2:4 
LNCipedia gene ID: lnc-FER-2
Location (hg19): chr5:107728768-107753700
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT103122; FPKM1_group_26125_transcript_7
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4203 non-coding 
CPAT coding probability 1.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FER-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FER-2:4
4.0 lnc-FER-2:4
4.1 lnc-FER-2:4
5.0 lnc-FER-2:4
5.1 lnc-AP3S1-109:12
5.2 lnc-FER-2:4