Transcript: lnc-FER1L6-1:1

Basic information

LNCipedia transcript ID: lnc-FER1L6-1:1 
LNCipedia gene ID: lnc-FER1L6-1
Ensembl Gene ID: ENSG00000253227
Ensembl Transcript ID: ENST00000517482
Location (hg19): chr8:125283924-125289825
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517482; ENST00000517482.1; RP11-383J24.1-001; OTTHUMT00000381462.1; NONHSAT128580
Alternative gene names: ENSG00000253227; RP11-383J24.1; ENSG00000253227.1; OTTHUMG00000165019.1; AC090192.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.872 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FER1L6-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FER1L6-1:1
3.1 lnc-FER1L6-1:1
4.0 lnc-FER1L6-1:1
4.1 lnc-FER1L6-1:1
5.0 lnc-FER1L6-1:1
5.1 lnc-TRMT12-1:1
5.2 lnc-FER1L6-1:1