Transcript: lnc-FGF9-3:9

Basic information

LNCipedia transcript ID: lnc-FGF9-3:9 
LNCipedia gene ID: lnc-FGF9-3
Ensembl Gene ID: ENSG00000276476
Ensembl Transcript ID: ENST00000616974
RefSeq ID: NR_103810
Location (hg19): chr13:22784424-22850660
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2143 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000616974.1; NR_103810.1
Alternative gene names: ENSG00000276476.2; LINC00540


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -101.7451 non-coding 
CPAT coding probability 9.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGF9-3:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-FGF9-3:9
4.1 lnc-FGF9-3:9
5.0 lnc-FGF9-3:9
5.1 lnc-GTF3A-103:16
5.2 lnc-FGF9-3:9