Transcript: lnc-FGFR1OP-20:1

Basic information

LNCipedia transcript ID: lnc-FGFR1OP-20:1 
LNCipedia gene ID: lnc-FGFR1OP-20
Location (hg19): chr6:166650457-166657197
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 980 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000444219; ENST00000444219.1; RP4-655C5.4-001; OTTHUMT00000043045.1; NONHSAT147443
Alternative gene names: ENSG00000233365; RP4-655C5.4; ENSG00000233365.1; OTTHUMG00000015997.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.2045 non-coding 
CPAT coding probability 4.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR1OP-20:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFR1OP-3:1
3.1 lnc-FGFR1OP-4:1
4.0 lnc-FGFR1OP-4:1
4.1 lnc-FGFR1OP-4:1
5.0 lnc-FGFR1OP-4:1
5.1 lnc-SYTL3-67:1
5.2 lnc-FGFR1OP-20:1