Transcript: lnc-FGFR2-12:12

Basic information

LNCipedia transcript ID: lnc-FGFR2-12:12 
LNCipedia gene ID: lnc-FGFR2-12
Location (hg19): chr10:122522913-122551437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 907 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000451706; ENST00000451706.1; RP11-323P17.1-002; OTTHUMT00000050705.1
Alternative gene names: ENSG00000227165; RP11-323P17.1; ENSG00000227165.1; OTTHUMG00000019169.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.0333 non-coding 
CPAT coding probability 8.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR2-12:12 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFR2-4:1
3.1 lnc-FGFR2-4:1
4.0 WDR11-AS1:8
4.1 WDR11-AS1:8
5.0 WDR11-AS1:8
5.1 lnc-NSMCE4A-92:12
5.2 lnc-FGFR2-12:12