Transcript: lnc-FIG4-1:1

Basic information

LNCipedia transcript ID: lnc-FIG4-1:1 
LNCipedia gene ID: lnc-FIG4-1
Ensembl Gene ID: ENSG00000232311
Ensembl Transcript ID: ENST00000458693
Location (hg19): chr6:110147725-110149988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011354; ENST00000458693; ENST00000458693.1; RP1-249I4.2-001; OTTHUMT00000041773.1; NONHSAT114412
Alternative gene names: XLOC_005423; linc-GPR6; ENSG00000232311; RP1-249I4.2; ENSG00000232311.1; OTTHUMG00000015353.1; AL512303.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.5529 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FIG4-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FIG4-1:1
3.1 lnc-FIG4-1:1
4.0 lnc-FIG4-1:1
4.1 lnc-FIG4-1:1
5.0 lnc-FIG4-1:1
5.1 lnc-SMPD2-12:3
5.2 lnc-FIG4-1:1