Transcript: lnc-FIP1L1-2:2

Basic information

LNCipedia transcript ID: lnc-FIP1L1-2:2 
LNCipedia gene ID: lnc-FIP1L1-2
Ensembl Gene ID: ENSG00000249341
Ensembl Transcript ID: ENST00000506950
RefSeq ID: NR_125918
Location (hg19): chr4:54562068-54600525
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1616 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506950.1; RP11-317M11.1-001; OTTHUMT00000361556.1; NONHSAT096405; NR_125918; NR_125918.1
Alternative gene names: ENSG00000249341.1; RP11-317M11.1; OTTHUMG00000160650.1; AC124017.1; LOC100506444


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0572 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FIP1L1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSX2-2:2
4.0 lnc-GSX2-2:2
4.1 lnc-GSX2-2:2
5.0 lnc-GSX2-2:2
5.1 lnc-CEP135-49:2
5.2 lnc-FIP1L1-2:2