Transcript: lnc-FITM2-5:1

Basic information

LNCipedia transcript ID: lnc-FITM2-5:1 
LNCipedia gene ID: lnc-FITM2-5
Location (hg19): chr20:43025856-43028457
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2058 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002xna_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.4375 non-coding 
CPAT coding probability 7.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FITM2-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C20orf62-5:1
4.0 lnc-C20orf62-5:1
4.1 lnc-C20orf62-5:1
5.0 lnc-C20orf62-5:1
5.1 lnc-MATN4-31:1
5.2 lnc-FITM2-5:1