Transcript: lnc-FNBP1-5:1

Basic information

LNCipedia transcript ID: lnc-FNBP1-5:1 
LNCipedia gene ID: lnc-FNBP1-5
Ensembl Gene ID: ENSG00000196979
Ensembl Transcript ID: ENST00000358748
RefSeq ID: NR_135124
Location (hg19): chr9:132902889-132906498
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3258 bp
Exons: 2
Sources: Broad Institute; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00015635; ENST00000358748.1; NR_135124.1
Alternative gene names: XLOC_007870; linc-FNBP1-2; ENSG00000196979.1; RP11-88G17.6; AL360004.1; LOC401554


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.1636 non-coding 
CPAT coding probability 49.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FNBP1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AL360004.1-1:1
3.1 lnc-AL360004.1-1:1
4.0 lnc-AL360004.1-1:1
4.1 lnc-AL360004.1-1:1
5.0 lnc-AL360004.1-1:1
5.1 lnc-SPOUT1-64:1
5.2 lnc-FNBP1-5:1