Transcript: lnc-FNBP1L-2:1

Basic information

LNCipedia transcript ID: lnc-FNBP1L-2:1 
LNCipedia gene ID: lnc-FNBP1L-2
Ensembl Gene ID: ENSG00000260464
Ensembl Transcript ID: ENST00000565336
Location (hg19): chr1:94312730-94314495
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1766 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565336.1; RP4-561L24.3-001; OTTHUMT00000431234.1; NONHSAT004551
Alternative gene names: ENSG00000260464.1; RP4-561L24.3; OTTHUMG00000175883.1; AL049796.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.7947 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FNBP1L-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FNBP1L-2:1
4.0 lnc-FNBP1L-2:1
4.1 lnc-FNBP1L-2:1
5.0 lnc-FNBP1L-2:1
5.1 lnc-BTBD8-25:6
5.2 lnc-FNBP1L-2:1