Transcript: lnc-FNDC1-1:1

Basic information

LNCipedia transcript ID: lnc-FNDC1-1:1 
LNCipedia gene ID: lnc-FNDC1-1
Location (hg19): chr6:159586941-159588385
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00011403; ENST00000419064; ENST00000419064.1; RP11-13P5.2-001; OTTHUMT00000042896.1; NONHSAT115834
Alternative gene names: XLOC_005522; linc-FNDC1-1; ENSG00000233682; RP11-13P5.2; ENSG00000233682.1; OTTHUMG00000015926.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -393.6676 non-coding 
CPAT coding probability 0.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FNDC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FNDC1-1:1
3.1 lnc-FNDC1-1:1
4.0 lnc-FNDC1-1:1
4.1 lnc-FNDC1-1:1
5.0 lnc-FNDC1-1:1
5.1 lnc-SYTL3-10:1
5.2 lnc-FNDC1-1:1