Transcript: lnc-FOXB1-6:1

Basic information

LNCipedia transcript ID: lnc-FOXB1-6:1 
LNCipedia gene ID: lnc-FOXB1-6
Location (hg19): chr15:60296433-60353929
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 767 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT044192
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
LATVSLPR 100% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0192 non-coding 
CPAT coding probability 30.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXB1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXB1-6:1
4.0 lnc-FOXB1-6:1
4.1 lnc-FOXB1-6:1
5.0 lnc-FOXB1-6:1
5.1 lnc-MAP2K1-86:1
5.2 lnc-FOXB1-6:1