Transcript: lnc-FOXB2-9:5

Basic information

LNCipedia transcript ID: lnc-FOXB2-9:5 
HGNC Gene Symbol: lnc-FOXB2-9    
HGNC Full Gene Name: prostate cancer associated 3
Ensembl Gene ID: ENSG00000225937
Ensembl Transcript ID: ENST00000647300
Location (hg19): chr9:79379375-79393847
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 634 bp
Exons: 2
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000647300.1
Alternative gene names: ENSG00000225937.2; PCA3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -120.881 non-coding 
CPAT coding probability 2.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXB2-9:5 yes no no no

Available literature

  1. Neveu (2016), A PCA3 gene-based transcriptional amplification system targeting primary prostate cancer., Oncotarget
  2. Drayton (2015), Identification and diagnostic performance of a small RNA within the PCA3 and BMCC1 gene locus that potentially targets mRNA., Cancer Epidemiol. Biomarkers Prev.
  3. Gui (2015), Altered microRNA profiles in cerebrospinal fluid exosome in Parkinson disease and Alzheimer disease., Oncotarget
  4. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.
  5. Jiang (2015), LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data., BMC Genomics
  6. Liu (2015), Construction of a lncRNA-PCG bipartite network and identification of cancer-related lncRNAs: a case study in prostate cancer., Mol Biosyst
  7. Liu (2015), Carboplatin-docetaxel-induced activity against ovarian cancer is dependent on up-regulated lncRNA PVT1., Int J Clin Exp Pathol
  8. Marangoni (2015), Prostate-specific RNA aptamer: promising nucleic acid antibody-like cancer detection., Sci Rep
  9. Salameh (2015), PRUNE2 is a human prostate cancer suppressor regulated by the intronic long noncoding RNA PCA3., Proc. Natl. Acad. Sci. U.S.A.
  10. Silva (2015), The Clinical Relevance of Long Non-Coding RNAs in Cancer., Cancers (Basel)


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 PCA3:18
5.1 lnc-ANXA1-61:5
5.2 lnc-FOXB2-9:5

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