Transcript: lnc-FOXD4L5-25:4

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-25:4 
LNCipedia gene ID: lnc-FOXD4L5-25
RefSeq ID: NR_122077
Location (hg19): chr9:66523813-66553911
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1029 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445604; ENST00000445604.1; RP11-262H14.3-001; OTTHUMT00000037074.1; NONHSAT131544; NR_122077.1
Alternative gene names: ENSG00000234665; RP11-262H14.3; ENSG00000234665.1; OTTHUMG00000013293.1; LOC403323


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 61.3852 coding 
CPAT coding probability 27.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXD4L5-25:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A7-4:1
3.1 lnc-FAM75A7-4:1
4.0 lnc-FAM75A7-4:1
4.1 lnc-FAM75A7-4:1
5.0 lnc-FAM75A7-4:1
5.1 lnc-ZFAND5-79:4
5.2 lnc-FOXD4L5-25:4