Transcript: lnc-FOXD4L5-34:1

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-34:1 
LNCipedia gene ID: lnc-FOXD4L5-34
Location (hg19): chr9:46698574-46705305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3223 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000428709; ENST00000428709.1; RP11-111F5.8-001; OTTHUMT00000143935.1
Alternative gene names: ENSG00000233651; RP11-111F5.8; ENSG00000233651.1; OTTHUMG00000067237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.5117 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L5-34:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27E1.1-6:1
3.1 lnc-FAM27E1.1-6:1
4.0 lnc-FAM27E1.1-6:1
4.1 lnc-FAM27E1.1-6:1
5.0 lnc-FAM27E1.1-6:1
5.1 lnc-ZFAND5-88:1
5.2 lnc-FOXD4L5-34:1