Transcript: lnc-FOXD4L5-44:3

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-44:3 
LNCipedia gene ID: lnc-FOXD4L5-44
Location (hg19): chr9:41529583-41550387
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 482 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000415013; ENST00000415013.1; RP11-144A16.5-001; OTTHUMT00000128848.1; NONHSAT131262
Alternative gene names: ENSG00000227084; RP11-144A16.5; ENSG00000227084.1; OTTHUMG00000058154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4881 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L5-44:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A4-1:1
3.1 lnc-FAM75A4-1:1
4.0 lnc-FAM75A4-1:1
4.1 lnc-FAM75A4-1:1
5.0 lnc-FAM75A4-1:1
5.1 lnc-ZFAND5-100:3
5.2 lnc-FOXD4L5-44:3