Transcript: lnc-FOXD4L6-1:9

Basic information

LNCipedia transcript ID: lnc-FOXD4L6-1:9 
LNCipedia gene ID: lnc-FOXD4L6-1
Ensembl Gene ID: ENSG00000276462
Ensembl Transcript ID: ENST00000620833
Location (hg19): chr9:69174213-69179458
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2874 bp
Exons: 4
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015826; ENST00000423390.1; BX255923.3-001; OTTHUMT00000143430.1; NONHSAT131650; ENST00000620833.1
Alternative gene names: XLOC_007714; linc-FAM75A7-8; ENSG00000240907.1; BX255923.3; OTTHUMG00000066918.1; ENSG00000276462.1; BX255923.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6096 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L6-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L6-1:9
3.1 lnc-FOXD4L6-1:9
4.0 lnc-FOXD4L6-1:9
4.1 lnc-FOXD4L6-1:9
5.0 lnc-FOXD4L6-1:9
5.1 lnc-SHB-37:9
5.2 lnc-FOXD4L6-1:9