Transcript: lnc-FOXG1-22:3

Basic information

LNCipedia transcript ID: lnc-FOXG1-22:3 
LNCipedia gene ID: lnc-FOXG1-22
Location (hg19): chr14:27546444-27930810
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000553468; ENST00000553468.1; RP11-384J4.2-003; OTTHUMT00000409666.1; NONHSAT036136
Alternative gene names: ENSG00000258081; RP11-384J4.2; ENSG00000258081.2; OTTHUMG00000170435.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.4138 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXG1-22:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXG1-4:3
3.1 lnc-FOXG1-4:3
4.0 lnc-FOXG1-4:3
4.1 lnc-FOXG1-4:3
5.0 lnc-FOXG1-4:3
5.1 lnc-G2E3-29:3
5.2 lnc-FOXG1-22:3