Transcript: lnc-FOXI2-1:1

Basic information

LNCipedia transcript ID: lnc-FOXI2-1:1 
LNCipedia gene ID: lnc-FOXI2-1
Ensembl Gene ID: ENSG00000227076
Ensembl Transcript ID: ENST00000433110
Location (hg19): chr10:129732962-129734431
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 371 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433110.1; RP11-4C20.4-001; OTTHUMT00000050986.1
Alternative gene names: ENSG00000227076.1; RP11-4C20.4; OTTHUMG00000019252.1; AL158166.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.4798 non-coding 
CPAT coding probability 4.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXI2-1:1 no no no no

Available literature

  1. Cao (2013), Analysis of long non-coding RNA expression profiles in gastric cancer., World J. Gastroenterol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXI2-1:1
4.0 lnc-FOXI2-1:1
4.1 lnc-FOXI2-1:1
5.0 lnc-FOXI2-1:1
5.1 lnc-FOXI2-1:1
5.2 lnc-FOXI2-1:1