Transcript: lnc-FOXN4-2:1

Basic information

LNCipedia transcript ID: lnc-FOXN4-2:1 
LNCipedia gene ID: lnc-FOXN4-2
Location (hg19): chr12:109686310-109688463
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2154 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000013271.1|HBMT00000340099.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.2447 non-coding 
CPAT coding probability 1.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXN4-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FOXN4-2:1
5.0 lnc-FOXN4-2:1
5.1 lnc-GPN3-22:1
5.2 lnc-FOXN4-2:1