Transcript: lnc-FRMD5-1:1

Basic information

LNCipedia transcript ID: lnc-FRMD5-1:1 
LNCipedia gene ID: lnc-FRMD5-1
Location (hg19): chr15:44580911-44581547
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 589 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000558359.1; RP11-616K22.3-001; OTTHUMT00000415376.1; NONHSAT042143
Alternative gene names: ENSG00000259653.1; RP11-616K22.3; OTTHUMG00000171844.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRMD5-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRMD5-1:1
4.0 lnc-FRMD5-1:1
4.1 lnc-FRMD5-1:1
5.0 lnc-FRMD5-1:1
5.1 lnc-SERINC4-8:1
5.2 lnc-FRMD5-1:1