Transcript: lnc-FRY-1:1

Basic information

LNCipedia transcript ID: lnc-FRY-1:1 
LNCipedia gene ID: lnc-FRY-1
Location (hg19): chr13:32872291-32872849
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 437 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000418076.1; RP11-37E23.5-001; OTTHUMT00000044404.1
Alternative gene names: ENSG00000230633.1; RP11-37E23.5; OTTHUMG00000016695.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.7758 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FRY-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FRY-1:1
4.0 lnc-FRY-1:1
4.1 lnc-FRY-1:1
5.0 lnc-FRY-1:1
5.1 lnc-PDS5B-5:2
5.2 lnc-FRY-1:1