Transcript: lnc-FSCB-1:8

Basic information

LNCipedia transcript ID: lnc-FSCB-1:8 
LNCipedia gene ID: lnc-FSCB-1
Ensembl Gene ID: ENSG00000259126
Ensembl Transcript ID: ENST00000557506
Location (hg19): chr14:44861745-44862919
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 248 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000557506; ENST00000557506.1; RP11-99L13.2-002; OTTHUMT00000410018.1; NONHSAT036606
Alternative gene names: ENSG00000259126; RP11-99L13.2; ENSG00000259126.1; OTTHUMG00000170686.1; AL161752.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -568.0326 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSCB-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSCB-1:8
3.1 lnc-FSCB-1:8
4.0 lnc-FSCB-1:8
4.1 lnc-FSCB-1:8
5.0 lnc-FSCB-1:8
5.1 lnc-RTN1-160:17
5.2 lnc-FSCB-1:8