Transcript: lnc-FSIP1-4:33

Basic information

LNCipedia transcript ID: lnc-FSIP1-4:33 
LNCipedia gene ID: lnc-FSIP1-4
Ensembl Gene ID: ENSG00000259345
Ensembl Transcript ID: ENST00000560743
Location (hg19): chr15:39480639-39486510
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1961 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560743.1; RP11-265N7.1-001; OTTHUMT00000418671.1; NONHSAT041735
Alternative gene names: ENSG00000259450.1; RP11-265N7.1; OTTHUMG00000172465.1; AC113146.2; ENSG00000259345.6; AC013652.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.8565 non-coding 
CPAT coding probability 4.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSIP1-4:33 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSIP1-7:1
4.0 lnc-FSIP1-7:1
4.1 lnc-FSIP1-4:33
5.0 lnc-FSIP1-4:33
5.1 lnc-VPS39-60:30
5.2 lnc-FSIP1-4:33