Transcript: lnc-FSIP1-9:1

Basic information

LNCipedia transcript ID: lnc-FSIP1-9:1 
LNCipedia gene ID: lnc-FSIP1-9
Location (hg19): chr15:39377530-39386019
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5197 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_1147_chr15:39377529-39386019_breast
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.2671 non-coding 
CPAT coding probability 14.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSIP1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FSIP1-9:1
4.0 lnc-FSIP1-9:1
4.1 lnc-FSIP1-9:1
5.0 lnc-FSIP1-9:1
5.1 lnc-VPS39-59:1
5.2 lnc-FSIP1-9:1