Transcript: lnc-FSTL4-1:2

Basic information

LNCipedia transcript ID: lnc-FSTL4-1:2 
LNCipedia gene ID: lnc-FSTL4-1
Ensembl Gene ID: ENSG00000251616
Ensembl Transcript ID: ENST00000507389
Location (hg19): chr5:132446747-132450167
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 678 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507389; ENST00000507389.1; RP11-485M7.3-001; OTTHUMT00000370160.1; NONHSAT103804
Alternative gene names: ENSG00000251616; RP11-485M7.3; ENSG00000251616.1; OTTHUMG00000162706.1; AC113410.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.2812 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FSTL4-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FSTL4-1:2
3.1 lnc-FSTL4-1:2
4.0 lnc-FSTL4-1:2
4.1 lnc-FSTL4-1:2
5.0 lnc-FSTL4-1:2
5.1 lnc-TIFAB-45:3
5.2 lnc-FSTL4-1:2