Transcript: lnc-FTCDNL1-1:2

Basic information

LNCipedia transcript ID: lnc-FTCDNL1-1:2 
LNCipedia gene ID: lnc-FTCDNL1-1
Location (hg19): chr2:200625267-200715896
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 944 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00002678
Alternative gene names: XLOC_002452; linc-SATB2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -166.8015 non-coding 
CPAT coding probability 9.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FTCDNL1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC073043.2.1-1:2
3.1 lnc-AC073043.2.1-1:2
4.0 lnc-AC073043.2.1-1:2
4.1 lnc-AC073043.2.1-1:2
5.0 lnc-AC073043.2.1-1:2
5.1 lnc-HSPD1-37:2
5.2 lnc-FTCDNL1-1:2