Transcript: lnc-FTMT-2:3

Basic information

LNCipedia transcript ID: lnc-FTMT-2:3 
LNCipedia gene ID: lnc-FTMT-2
Ensembl Gene ID: ENSG00000229855
Ensembl Transcript ID: ENST00000609647
Location (hg19): chr5:120649672-120661175
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 424 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609647.1; ENST00000609647.5
Alternative gene names: ENSG00000229855.4; CTC-546K23.1; ENSG00000229855.8; AC008568.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.7184 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FTMT-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FTMT-2:3
4.0 lnc-FTMT-2:3
4.1 lnc-FTMT-2:3
5.0 lnc-FTMT-2:3
5.1 lnc-AP3S1-74:7
5.2 lnc-FTMT-2:3