Transcript: lnc-FUS-5:1

Basic information

LNCipedia transcript ID: lnc-FUS-5:1 
LNCipedia gene ID: lnc-FUS-5
Location (hg19): chr16:31237281-31238481
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1201 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000576745.1; RP11-388M20.9-001; OTTHUMT00000441035.1; NONHSAT141891
Alternative gene names: ENSG00000261925.1; RP11-388M20.9; OTTHUMG00000178222.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.8022 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FUS-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM72-1:1
4.0 lnc-TRIM72-1:1
4.1 lnc-TRIM72-1:1
5.0 lnc-TRIM72-1:1
5.1 lnc-ZNF646-21:2
5.2 lnc-FUS-5:1