Transcript: lnc-FZD4-1:2

Basic information

LNCipedia transcript ID: lnc-FZD4-1:2 
LNCipedia gene ID: lnc-FZD4-1
Ensembl Gene ID: ENSG00000255471
Ensembl Transcript ID: ENST00000528660
Location (hg19): chr11:86603256-86633146
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1156 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528660.1; RP11-736K20.5-001; OTTHUMT00000393815.1; NONHSAT023501
Alternative gene names: ENSG00000255471.1; RP11-736K20.5; OTTHUMG00000167229.1; AP001528.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.8751 non-coding 
CPAT coding probability 1.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FZD4-1:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FZD4-1:2
4.0 lnc-FZD4-1:2
4.1 lnc-FZD4-1:2
5.0 lnc-FZD4-1:2
5.1 lnc-CREBZF-24:5
5.2 lnc-FZD4-1:2