Transcript: lnc-GAB1-1:1

Basic information

LNCipedia transcript ID: lnc-GAB1-1:1 
LNCipedia gene ID: lnc-GAB1-1
Ensembl Gene ID: ENSG00000250969
Ensembl Transcript ID: ENST00000512715
Location (hg19): chr4:144207446-144251011
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 624 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007644; ENST00000512715; ENST00000512715.1; RP11-364L4.3-001; OTTHUMT00000365278.1; NONHSAT098551
Alternative gene names: XLOC_003715; linc-GAB1; ENSG00000250969; RP11-364L4.3; ENSG00000250969.1; OTTHUMG00000161553.1; AC097658.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 14.259 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAB1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GAB1-1:1
3.1 lnc-GAB1-1:1
4.0 lnc-GAB1-1:1
4.1 lnc-GAB1-1:1
5.0 lnc-GAB1-1:1
5.1 lnc-SMAD1-18:1
5.2 lnc-GAB1-1:1