Transcript: lnc-GABPA-23:1

Basic information

LNCipedia transcript ID: lnc-GABPA-23:1 
LNCipedia gene ID: lnc-GABPA-23
Location (hg19): chr21:27932852-27966389
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 627 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_2183_chr21:27932851-27966389_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.884 non-coding 
CPAT coding probability 10.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GABPA-23:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GABPA-16:1
4.0 lnc-GABPA-16:1
4.1 CYYR1-AS1:7
5.0 CYYR1-AS1:7
5.1 lnc-OLIG1-192:1
5.2 lnc-GABPA-23:1