Transcript: lnc-GALNT3-1:1

Basic information

LNCipedia transcript ID: lnc-GALNT3-1:1 
LNCipedia gene ID: lnc-GALNT3-1
Ensembl Gene ID: ENSG00000229195
Ensembl Transcript ID: ENST00000428888
Location (hg19): chr2:166651367-166702601
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000428888; ENST00000428888.1; AC009495.4-001; OTTHUMT00000333609.1; NONHSAT075260
Alternative gene names: ENSG00000229195; AC009495.4; ENSG00000229195.1; OTTHUMG00000154038.1; AC009495.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.1678 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALNT3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GALNT3-1:1
3.1 lnc-GALNT3-1:1
4.0 lnc-GALNT3-1:1
4.1 lnc-GALNT3-1:1
5.0 lnc-GALNT3-1:1
5.1 lnc-SCN9A-8:3
5.2 lnc-GALNT3-1:1