Transcript: lnc-GALNT3-1:4

Basic information

LNCipedia transcript ID: lnc-GALNT3-1:4 
LNCipedia gene ID: lnc-GALNT3-1
Ensembl Gene ID: ENSG00000232411
Ensembl Transcript ID: ENST00000457108
Location (hg19): chr2:166689558-166695608
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 506 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457108; ENST00000457108.1; AC009495.3-001; OTTHUMT00000333594.1; NONHSAT075262
Alternative gene names: ENSG00000232411; AC009495.3; ENSG00000232411.1; OTTHUMG00000154037.1; AC009495.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.8933 non-coding 
CPAT coding probability 2.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALNT3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TTC21B-1:1
3.1 lnc-TTC21B-1:1
4.0 lnc-TTC21B-1:1
4.1 lnc-GALNT3-1:4
5.0 lnc-GALNT3-1:4
5.1 lnc-SCN9A-8:4
5.2 lnc-GALNT3-1:4