Transcript: lnc-GALNTL5-2:1

Basic information

LNCipedia transcript ID: lnc-GALNTL5-2:1 
LNCipedia gene ID: lnc-GALNTL5-2
Location (hg19): chr7:151503744-151504728
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 579 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000481153.2; RP13-452N2.1-002; OTTHUMT00000348458.2
Alternative gene names: ENSG00000242048.2; RP13-452N2.1; OTTHUMG00000157325.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.2889 non-coding 
CPAT coding probability 2.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GALNTL5-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALNTL5-2:1
4.0 lnc-GALNTL5-2:1
4.1 lnc-GALNTL5-2:1
5.0 lnc-GALNTL5-2:1
5.1 lnc-GIMAP2-35:8
5.2 lnc-GALNTL5-2:1