Transcript: lnc-GALNTL5-2:2

Basic information

LNCipedia transcript ID: lnc-GALNTL5-2:2 
LNCipedia gene ID: lnc-GALNTL5-2
Location (hg19): chr7:151503820-151507906
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2139 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000462083.2; RP13-452N2.1-001; OTTHUMT00000348457.2; NONHSAT124238
Alternative gene names: ENSG00000242048.2; RP13-452N2.1; OTTHUMG00000157325.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.2774 non-coding 
CPAT coding probability 40.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GALNTL5-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GALNTL5-2:2
4.0 lnc-GALNTL5-2:2
4.1 lnc-GALNTL5-2:2
5.0 lnc-GALNTL5-2:2
5.1 lnc-GIMAP2-35:9
5.2 lnc-GALNTL5-2:2