Transcript: lnc-GAPDH-2:1

Basic information

LNCipedia transcript ID: lnc-GAPDH-2:1 
LNCipedia gene ID: lnc-GAPDH-2
Ensembl Gene ID: ENSG00000276232
Ensembl Transcript ID: ENST00000541782
Location (hg19): chr12:6619441-6619688
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 248 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541782.1; SCARNA10-001; OTTHUMT00000402606.1; NONHSAT026097
Alternative gene names: ENSG00000256329.1; SCARNA10; OTTHUMG00000169160.1; ENSG00000239002.2; ENSG00000276232.1; AC006064.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.7983 non-coding 
CPAT coding probability 1.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GAPDH-2:1 yes no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GAPDH-2:1
4.0 lnc-GAPDH-2:1
4.1 lnc-GAPDH-2:1
5.0 lnc-GAPDH-2:1
5.1 lnc-CLEC4D-65:2
5.2 lnc-GAPDH-2:1