Transcript: lnc-GARS-9:1

Basic information

LNCipedia transcript ID: lnc-GARS-9:1 
LNCipedia gene ID: lnc-GARS-9
Location (hg19): chr7:30586782-30590397
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 353 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00012989; NONHSAT119887
Alternative gene names: XLOC_006037; linc-GARS-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.7847 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GARS-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GARS-1:1
3.1 lnc-GARS-2:1
4.0 lnc-GARS-2:1
4.1 lnc-GARS-1:2
5.0 lnc-GARS-1:2
5.1 lnc-MTURN-12:1
5.2 lnc-GARS-9:1